KMS Institute of Vertebrate Paleontology and Paleoanthropology
| Tracing the genetic footprints of vertebrate landing in non-teleost ray-finned fishes | |
Bi, Xupeng1,2; Wang, Kun3; Yang, Liandong1; Pan, Hailin2; Jiang, Haifeng1; Wei, Qiwei4; Fang, Miaoquan2; Yu, Hao2; Zhu, Chenglong3; Cai, Yiran2; He, Yuming2; Gan, Xiaoni1; Zeng, Honghui1; Yu, Daqi5,6,7; Zhu, Youan8,9; Jiang, Huifeng10; Qiu, Qiang3; Yang, Huanming2,11,12; Zhang, Yong E.5,6,7,13; Wang, Wen3,13,14; Zhu, Min8,9,15 ; He, Shunping1,13,16; Zhang, Guojie2,13,14,17
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| 2021-03-04 | |
| 发表期刊 | CELL
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| ISSN | 0092-8674 |
| 卷号 | 184期号:5页码:1-15 |
| 摘要 | Rich fossil evidence suggests that many traits and functions related to terrestrial evolution were present long before the ancestor of lobe- and ray-finned fishes. Here, we present genome sequences of the bichir, paddlefish, bowfin, and alligator gar, covering all major early divergent lineages of ray-finned fishes. Our analyses show that these species exhibit many mosaic genomic features of lobe- and ray-finned fishes. In particular, many regulatory elements for limb development are present in these fishes, supporting the hypothesis that the relevant ancestral regulation networks emerged before the origin of tetrapods. Transcriptome analyses confirm the homology between the lung and swim bladder and reveal the presence of functional lung-related genes in early ray-finned fishes. Furthermore, we functionally validate the essential role of a jawed vertebrate highly conserved element for cardiovascular development. Our results imply the ancestors of jawed vertebrates already had the potential gene networks for cardio-respiratory systems supporting air breathing. |
| DOI | 10.1016/j.cell.2021.01.046 |
| 收录类别 | SCI |
| 语种 | 英语 |
| 资助项目 | Youth Innovation Promotion Association, Chinese Academy of Sciences ; Fish10K project ; Wuhan Frasergen Bioinformatics Co., Ltd. ; State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences ; National Natural Science Foundation of China[41876179] ; National Natural Science Foundation of China[31972866] ; Strategic Priority Research Program of the Chinese Academy of Sciences[XDB13000000] ; Strategic Priority Research Program of the Chinese Academy of Sciences[XDB31020000] ; Villum Investigator grant from The Villum Foundation[25900] ; Guangdong Provincial Academician Workstation of BGI Synthetic Genomics[2017B090904014] |
| WOS研究方向 | Biochemistry & Molecular Biology ; Cell Biology |
| WOS类目 | Biochemistry & Molecular Biology ; Cell Biology |
| WOS记录号 | WOS:000629635700022 |
| 出版者 | CELL PRESS |
| 引用统计 | |
| 文献类型 | 期刊论文 |
| 条目标识符 | http://119.78.100.205/handle/311034/18535 |
| 专题 | 中科院古脊椎所（2000年以后） |
| 通讯作者 | Wang, Wen; Zhu, Min; He, Shunping; Zhang, Guojie |
| 作者单位 | 1.Chinese Acad Sci, Inst Hydrobiol, State Key Lab Freshwater Ecol & Biotechnol, Wuhan 430072, Peoples R China 2.BGI Shenzhen, Shenzhen 518083, Peoples R China 3.Northwestern Polytech Univ, Sch Ecol & Environm, Xian 710072, Peoples R China 4.Chinese Acad Fishery Sci, Yangtze River Fisheries Res Inst, Key Lab Freshwater Biodivers Conservat, Minist Agr & Rural Affairs, Wuhan, Peoples R China 5.Chinese Acad Sci, Inst Zool, Key Lab Zool Systemat & Evolut, Beijing 100101, Peoples R China 6.Chinese Acad Sci, Inst Zool, State Key Lab Integrated Management Pest Insects, Beijing 100101, Peoples R China 7.Univ Chinese Acad Sci, Beijing 100049, Peoples R China 8.Chinese Acad Sci, Inst Vertebrate Paleontol & Paleoanthropol, Key Lab Vertebrate Evolut & Human Origins, 142 Xi Zhi Men Wai St, Beijing 100044, Peoples R China 9.CAS Ctr Excellence Life & Paleoenvironm, Beijing 100044, Peoples R China 10.Chinese Acad Sci, Tianjin Inst Ind Biotechnol, Tianjin, Peoples R China 11.James D Watson Inst Genome Sci, Hangzhou, Peoples R China 12.BGI Shenzhen, Guangdong Prov Academician Workstn BGI Synthet Ge, Shenzhen 518120, Peoples R China 13.Chinese Acad Sci, Ctr Excellence Anim Evolut & Genet, 32 Jiaochang Donglu, Kunming 650223, Yunnan, Peoples R China 14.Chinese Acad Sci, Kunming Inst Zool, State Key Lab Genet Resources & Evolut, Kunming 650223, Yunnan, Peoples R China 15.Univ Chinese Acad Sci, Coll Earth & Planetary Sci, Beijing 100049, Peoples R China 16.Chinese Acad Sci, Inst Deep Sea Sci & Engn, Sanya 572000, Peoples R China 17.Univ Copenhagen, Villum Ctr Biodivers Genom, Dept Biol, Sect Ecol & Evolut, Copenhagen, Denmark |
| 推荐引用方式 GB/T 7714 | Bi, Xupeng,Wang, Kun,Yang, Liandong,et al. Tracing the genetic footprints of vertebrate landing in non-teleost ray-finned fishes[J]. CELL,2021,184(5):1-15. |
| APA | Bi, Xupeng.,Wang, Kun.,Yang, Liandong.,Pan, Hailin.,Jiang, Haifeng.,...&Zhang, Guojie.(2021).Tracing the genetic footprints of vertebrate landing in non-teleost ray-finned fishes.CELL,184(5),1-15. |
| MLA | Bi, Xupeng,et al."Tracing the genetic footprints of vertebrate landing in non-teleost ray-finned fishes".CELL 184.5(2021):1-15. |
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| zhu 2021 cell.pdf（8096KB） | 期刊论文 | 作者接受稿 | 开放获取 | CC BY-NC-SA | 浏览 下载 | |
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