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Ancient Mitogenomes Provide New Insights into the Origin and Early Introduction of Chinese Domestic Donkeys
Wang, Linying1; Sheng, Guilian2,3; Preick, Michaela4; Hu, Songmei5; Deng, Tao6; Taron, Ulrike H.4; Barlow, Axel4,7; Hu, Jiaming8; Xiao, Bo8; Sun, Guojiang1; Song, Shiwen2; Hou, Xindong2,3; Lai, Xulong3,8; Hofreiter, Michael4; Yuan, Junxia1,3
2021-10-15
发表期刊FRONTIERS IN GENETICS
卷号12期号:0页码:8
摘要Both molecular data and archaeological evidence strongly support an African origin for the domestic donkey. Recent genetic studies further suggest that there were two distinct maternal lineages involved in its initial domestication. However, the exact introduction time and the dispersal process of domestic donkeys into ancient China are still unresolved. To address these questions, we retrieved three near-complete mitochondrial genomes from donkey specimens excavated from Gaoling County, Shaanxi Province, and Linxia Basin, Gansu Province, China, dated at 2,349-2,301, 469-311, and 2,160-2,004 cal. BP, respectively. Maximum-likelihood and Bayesian phylogenetic analyses reveal that the two older samples fall into the two different main lineages (i.e., clade I and clade II) of the domestic donkey, suggesting that the two donkey maternal lineages had been introduced into Midwestern China at least at the opening of Silk Road (approximately the first century BC). Bayesian analysis shows that the split of the two donkey maternal lineages is dated at 0.323 Ma (95% CI: 0.583-0.191 Ma) using root-tip dating calibrations based on near-complete mitogenomes, supporting the hypothesis that modern domestic donkeys go back to at least two independent domestication events. Moreover, Bayesian skyline plot analyses indicate an apparent female population increase between 5,000 and 2,500 years ago for clade I followed by a stable population size to the present day. In contrast, clade II keeps a relatively stable population size over the past 5,000 years. Overall, our study provides new insights into the early domestication history of Chinese domestic donkeys.

关键词Chinese domestic donkeys ancient DNA mitochondrial genome maternal lineage divergence time
DOI10.3389/fgene.2021.759831
关键词[WOS]GENOME SEQUENCE ; DNA ; ALIGNMENT
收录类别SCI
语种英语
WOS研究方向Genetics & Heredity
WOS类目Genetics & Heredity
WOS记录号WOS:000715985300001
出版者FRONTIERS MEDIA SA
引用统计
文献类型期刊论文
条目标识符http://119.78.100.205/handle/311034/19085
专题中科院古脊椎所(2000年以后)
通讯作者Hofreiter, Michael; Yuan, Junxia
作者单位1.China Univ Geosci, Fac Mat Sci & Chem, Wuhan, Peoples R China
2.China Univ Geosci, Sch Environm Studies, Wuhan, Peoples R China
3.China Univ Geosci, State Key Lab Biogeol & Environm Geol, Wuhan, Peoples R China
4.Univ Potsdam, Inst Biochem & Biol, Potsdam, Germany
5.Shaanxi Prov Inst Archaeol, Xian, Peoples R China
6.Chinese Acad Sci, Key Lab Vertebrate Evolut & Human Origins, IVPP, Beijing, Peoples R China
7.Nottingham Trent Univ, Sch Sci & Technol, Nottingham, England
8.China Univ Geosci, Sch Earth Sci, Wuhan, Peoples R China
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Wang, Linying,Sheng, Guilian,Preick, Michaela,et al. Ancient Mitogenomes Provide New Insights into the Origin and Early Introduction of Chinese Domestic Donkeys[J]. FRONTIERS IN GENETICS,2021,12(0):8.
APA Wang, Linying.,Sheng, Guilian.,Preick, Michaela.,Hu, Songmei.,Deng, Tao.,...&Yuan, Junxia.(2021).Ancient Mitogenomes Provide New Insights into the Origin and Early Introduction of Chinese Domestic Donkeys.FRONTIERS IN GENETICS,12(0),8.
MLA Wang, Linying,et al."Ancient Mitogenomes Provide New Insights into the Origin and Early Introduction of Chinese Domestic Donkeys".FRONTIERS IN GENETICS 12.0(2021):8.
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