IVPP-IR  > 中科院古脊椎所(2000年以后)
The Simons Genome Diversity Project: 300 genomes from 142 diverse populations
Mallick, Swapan1,2,3; Li, Heng2; Lipson, Mark1; Mathieson, Iain1; Gymrek, Melissa2,4,5,6; Racimo, Fernando7; Zhao, Mengyao1,2,3; Chennagiri, Niru1,2,3; Nordenfelt, Susanne1,2,3; Tandon, Arti1,2; Skoglund, Pontus1,2; Lazaridis, Iosif1,2; Sankararaman, Sriram1,2,65,66; Fu, Qiaomei1,2,8; Rohland, Nadin1,2; Renaud, Gabriel9; Erlich, Yaniv6,10,11; Willems, Thomas6,12; Gallo, Carla13; Spence, Jeffrey P.14; Song, Yun S.15,16,17,18; Poletti, Giovanni13; Balloux, Francois19; van Driem, George; de Knijff, Peter21; Romero, Irene Gallego22,23; Jha, Aashish R.24; Behar, Doron M.25; Bravi, Claudio M.26; Capelli, Cristian27; Hervig, Tor28; Moreno-Estrada, Andres29; Posukh, Olga L.30,31; Balanovska, Elena32; Balanovsky, Oleg32,33,34; Karachanak-Yankova, Sena35; Sahakyan, Hovhannes25,36; Toncheva, Draga35; Yepiskoposyan, Levon36; Tyler-Smith, Chris37; Xue, Yali37; Abdullah, M. Syafiq38; Ruiz-Linares, Andres39; Beall, Cynthia M.40; Di Rienzo, Anna24; Jeong, Choongwon24; Starikovskaya, Elena B.41; Metspalu, Ene25,42; Parik, Juri25; Villems, Richard25,42,43; Henn, Brenna M.44; Hodoglugil, Ugur45; Mahley, Robert46; Sajantila, Antti47; Stamatoyannopoulos, George48; Wee, Joseph T. S.49; Khusainova, Rita50,51; Khusnutdinova, Elza50,51; Litvinov, Sergey25,50,51; Ayodo, George52; Comas, David53; Hammer, Michael F.54; Kivisild, Toomas25,55; Klitz, William6; Winkler, Cheryl A.56; Labuda, Damian57; Bamshad, Michael58; Jorde, Lynn B.59; Tishkoff, Sarah A.60; Watkins, W. Scott61; Metspalu, Mait25; Dryomov, Stanislav41,62; Sukernik, Rem41,63; Singh, Lalji64,67; Thangaraj, Kumarasamy64; Paeaebo, Svante9; Kelso, Janet9; Patterson, Nick2; Reich, David1,2,3
2016-10-13
发表期刊NATURE
卷号538期号:7624页码:201-+
文章类型Article
摘要Here we report the Simons Genome Diversity Project data set: high quality genomes from 300 individuals from 142 diverse populations. These genomes include at least 5.8 million base pairs that are not present in the human reference genome. Our analysis reveals key features of the landscape of human genome variation, including that the rate of accumulation of mutations has accelerated by about 5% in non-Africans compared to Africans since divergence. We show that the ancestors of some pairs of present-day human populations were substantially separated by 100,000 years ago, well before the archaeologically attested onset of behavioural modernity. We also demonstrate that indigenous Australians, New Guineans and Andamanese do not derive substantial ancestry from an early dispersal of modern humans; instead, their modern human ancestry is consistent with coming from the same source as that of other non-Africans.
WOS标题词Science & Technology
DOI10.1038/nature18964
关键词[WOS]MODERN HUMANS ; MUTATION-RATE ; HISTORY ; NEANDERTHAL ; ANCESTRY ; SEQUENCE ; AFRICA ; DISPERSAL ; ADMIXTURE ; INFERENCE
收录类别SCI
语种英语
项目资助者Simons Foundation(SFARI 280376) ; US National Science Foundation(BCS-1032255) ; Human Frontier Science program(LT001095/2014) ; Wenner-Gren foundation ; Swedish Research Council (VR)(2014-453) ; NIJ(2014-DN-BX-K089) ; Career Award at the Scientific Interface from the Burroughs Wellcome Fund ; Natural Sciences and Engineering Research Council of Canada ; ERC(FP7- 261213) ; Russian Foundation for Basic Research(15-04-02543 ; Russian Scientific Fund(14-04-00827) ; Estonian Research Council ; European Regional Development Fund (European Union) through the Centre of Excellence in Genomics to Estonian Biocentre ; University of Tartu ; Spanish MINECO(CGL-44351-P) ; NIH(GM59290 ; Wellcome Trust(093051) ; NSF(0924726 ; CSIR Network Project grant(GENESIS: BSC0121) ; Packard Fellowship for Science and Engineering ; Max Planck Society ; 16-34-00599 ; 5DPIES022577 05 ; 1153911) ; 11-04-00725-a ; 1R01DK104339-01 ; 16-06-00303 ; 1R01GM113657-01 ; 16-04-00890) ; R01-GM094402 ; GM100233)
WOS研究方向Science & Technology - Other Topics
WOS类目Multidisciplinary Sciences
WOS记录号WOS:000386671000037
引用统计
文献类型期刊论文
条目标识符http://119.78.100.205/handle/311034/7539
专题中科院古脊椎所(2000年以后)
作者单位1.Harvard Med Sch, Dept Genet, Boston, MA 02115 USA
2.Broad Inst Harvard & MIT, Cambridge, MA 02142 USA
3.Harvard Med Sch, Howard Hughes Med Inst, Boston, MA 02115 USA
4.Whitehead Inst Biomed Res, Cambridge, MA 02142 USA
5.MIT, Harvard MIT Div Hlth Sci & Technol, Cambridge, MA USA
6.New York Genome Ctr, New York, NY 10013 USA
7.Univ Calif Berkeley, Dept Integrat Biol, Berkeley, CA 94720 USA
8.Chinese Acad Sci, Key Lab Vertebrate Evolut & Human Origins Chinese, IVPP, Beijing 100044, Peoples R China
9.Max Planck Inst Evolutionary Anthropol, Dept Evolutionary Genet, D-04103 Leipzig, Germany
10.Columbia Univ, Dept Comp Sci, New York, NY 10027 USA
11.Columbia Univ, Ctr Computat Biol & Bioinformat, New York, NY 10032 USA
12.MIT, Computat & Syst Biol Program, Cambridge, MA 02139 USA
13.Univ Peruana Cayetano Heredia, Fac Ciencias & Filosofia, Labs Invest & Desarrollo, Lima 15102, Peru
14.Univ Calif Berkeley, Computat Biol Grad Grp, Berkeley, CA 94720 USA
15.Univ Calif Berkeley, Div Comp Sci, Berkeley, CA 94720 USA
16.Univ Penn, Dept Stat, Philadelphia, PA 19104 USA
17.Univ Penn, Dept Math, Philadelphia, PA 19104 USA
18.Univ Penn, Dept Biol, Philadelphia, PA 19104 USA
19.UCL, Genet Inst, Gower St, London WC1E 6BT, England
20.Univ Bern, Inst Linguist, CH-3012 Bern, Switzerland
21.Leiden Univ, Med Ctr, Dept Human & Clin Genet, Postzone S5-P, NL-2333 ZA Leiden, Netherlands
22.Nanyang Technol Univ, Sch Biol Sci, Singapore 637551, Singapore
23.Nanyang Technol Univ, Lee Kong Chian Sch Med, Singapore 636921, Singapore
24.Univ Chicago, Dept Human Genet, Chicago, IL 60637 USA
25.Estonian Bioctr, Evolutionary Biol Grp, EE-51010 Tartu, Estonia
26.Univ Nacl La Plata, Inst Multidisciplinario Biol Celular IMBICE, Lab Genet Mol Poblac, CCT CONICET La Plata,CIC Buenos Aires, B1906APO, La Plata, Buenos Aires, Argentina
27.Univ Oxford, Dept Zool, Oxford OX1 3PS, England
28.Univ Bergen, Dept Clin Sci, N-5021 Bergen, Norway
29.CINVESTAV, Natl Lab Genom Biodivers LANGEBIO, Guanajuato 36821, Mexico
30.Siberian Branch Russian Acad Sci, Inst Cytol & Genet, Novosibirsk 630090, Russia
31.Novosibirsk State Univ, Novosibirsk 630090, Russia
32.Med Genet Res Ctr, Moscow 115478, Russia
33.Vavilov Inst Gen Genet, Moscow 119991, Russia
34.Moscow Inst Phys & Technol, Dolgopruclniy 141700, Russia
35.Med Univ Sofia, Dept Med Genet, Natl Human Genome Ctr, Sofia 1431, Bulgaria
36.Natl Acad Sci Armenia, Inst Mol Biol, Lab Ethnogen, Yerevan 0014, Armenia
37.Wellcome Trust Sanger Inst, Wellcome Genome Campus, Hinxton CB1O 1SA, Cambs, England
38.RIPAS Hosp, Bandar Seri Begawan, Brunei
39.UCL, Dept Genet Evolut & Environm, London WC1E 6BT, England
40.Case Western Reserve Univ, Dept Anthropol, Cleveland, OH 44106 USA
41.Russian Acad Sci, Siberian Branch, Inst Mol & Cellular Biol, Lab Human Mol Genet, Novosibirsk 630090, Russia
42.Univ Tartu, Dept Evolutionary Biol, EE-51010 Tartu, Estonia
43.Estonian Acad Sci, EE-10130 Tallinn, Estonia
44.SUNY Stony Brook, Dept Ecol & Evolut, Stony Brook, NY 11794 USA
45.NextBio, Santa Clara, CA 95050 USA
46.Gladstone Inst, San Francisco, CA 94158 USA
47.Univ Helsinki, Dept Forens Med, FIN-00014 Helsinki, Finland
48.Univ Washington, Div Med Genet, Dept Med, Seattle, WA 98195 USA
49.Natl Canc Ctr Singapore, Singapore 169610, Singapore
50.Russian Acad Sci, Inst Biochem & Genet, Ufa Res Ctr, Ufa 450054, Russia
51.Bashkir State Univ, Dept Genet & Fundamental Med, Ufa 450074, Russia
52.Jaramogi Oginga Odinga Univ Sci & Technol, Banda 40601, Kenya
53.Univ Pompeu Fabra, Dept Ciencies Expt St, Inst Biol Evolut CSIC UPF, Barcelona 08003, Spain
54.Univ Arizona, ARL Div Biotechnol, Tucson, AZ 85721 USA
55.Univ Cambridge, Div Biol Anthropol, Fitzwilliam St, Cambridge CB2 1QH, England
56.Leiclos Biomed Res Inc, NCI, Ctr Canc Res, Frederick Natl Lab,Basie Res Lab, Frederick, MD 21702 USA
57.Univ Montreal, CHU St Justine, Dept Pediat, Montreal, PQ H3T 1C5, Canada
58.Univ Washington, Dept Pediat, Seattle, WA 98119 USA
59.Univ Utah, Dept Human Genet, Sch Med, Salt Lake City, UT 34112 USA
60.Univ Penn, Dept Genet & Biol, Philadelphia, PA 19104 USA
61.Univ Utah, Eccles Inst Human Genet, Dept Human Genet, Salt Lake City, UT 84112 USA
62.Russian Acad Sci, Siberian Branch, Inst Archaeol & Ethnog, Dept Paleolith Archaeol, Novosibirsk 630090, Russia
63.Altai State Univ, Barnaul 656000, Russia
64.CSIR Ctr Cellular & Mol Biol, Hyderabad 500007, Andhra Pradesh, India
65.Univ Calif Los Angeles, Dept Comp Sci, Los Angeles, CA 90095 USA
66.Univ Calif Los Angeles, Dept Human Genet Sci, Los Angeles, CA 90095 USA
67.Genome Fdn, Hyderabad 500076, Andhra Pradesh, India
推荐引用方式
GB/T 7714
Mallick, Swapan,Li, Heng,Lipson, Mark,et al. The Simons Genome Diversity Project: 300 genomes from 142 diverse populations[J]. NATURE,2016,538(7624):201-+.
APA Mallick, Swapan.,Li, Heng.,Lipson, Mark.,Mathieson, Iain.,Gymrek, Melissa.,...&Reich, David.(2016).The Simons Genome Diversity Project: 300 genomes from 142 diverse populations.NATURE,538(7624),201-+.
MLA Mallick, Swapan,et al."The Simons Genome Diversity Project: 300 genomes from 142 diverse populations".NATURE 538.7624(2016):201-+.
条目包含的文件 下载所有文件
文件名称/大小 文献类型 版本类型 开放类型 使用许可
mallick2016.pdf(5810KB)期刊论文作者接受稿开放获取CC BY-NC-SA浏览 下载
个性服务
推荐该条目
保存到收藏夹
查看访问统计
导出为Endnote文件
谷歌学术
谷歌学术中相似的文章
[Mallick, Swapan]的文章
[Li, Heng]的文章
[Lipson, Mark]的文章
百度学术
百度学术中相似的文章
[Mallick, Swapan]的文章
[Li, Heng]的文章
[Lipson, Mark]的文章
必应学术
必应学术中相似的文章
[Mallick, Swapan]的文章
[Li, Heng]的文章
[Lipson, Mark]的文章
相关权益政策
中科院和国家自然科学...
收藏/分享
文件名: mallick2016.pdf
格式: Adobe PDF
所有评论 (0)
暂无评论
 

除非特别说明,本系统中所有内容都受版权保护,并保留所有权利。