KMS Institute of Vertebrate Paleontology and Paleoanthropology
The Simons Genome Diversity Project: 300 genomes from 142 diverse populations | |
Mallick, Swapan1,2,3; Li, Heng2; Lipson, Mark1; Mathieson, Iain1; Gymrek, Melissa2,4,5,6; Racimo, Fernando7; Zhao, Mengyao1,2,3; Chennagiri, Niru1,2,3; Nordenfelt, Susanne1,2,3; Tandon, Arti1,2; Skoglund, Pontus1,2; Lazaridis, Iosif1,2; Sankararaman, Sriram1,2,65,66; Fu, Qiaomei1,2,8; Rohland, Nadin1,2; Renaud, Gabriel9; Erlich, Yaniv6,10,11; Willems, Thomas6,12; Gallo, Carla13; Spence, Jeffrey P.14; Song, Yun S.15,16,17,18; Poletti, Giovanni13; Balloux, Francois19; van Driem, George; de Knijff, Peter21; Romero, Irene Gallego22,23; Jha, Aashish R.24; Behar, Doron M.25; Bravi, Claudio M.26; Capelli, Cristian27; Hervig, Tor28; Moreno-Estrada, Andres29; Posukh, Olga L.30,31; Balanovska, Elena32; Balanovsky, Oleg32,33,34; Karachanak-Yankova, Sena35; Sahakyan, Hovhannes25,36; Toncheva, Draga35; Yepiskoposyan, Levon36; Tyler-Smith, Chris37; Xue, Yali37; Abdullah, M. Syafiq38; Ruiz-Linares, Andres39; Beall, Cynthia M.40; Di Rienzo, Anna24; Jeong, Choongwon24; Starikovskaya, Elena B.41; Metspalu, Ene25,42; Parik, Juri25; Villems, Richard25,42,43; Henn, Brenna M.44; Hodoglugil, Ugur45; Mahley, Robert46; Sajantila, Antti47; Stamatoyannopoulos, George48; Wee, Joseph T. S.49; Khusainova, Rita50,51; Khusnutdinova, Elza50,51; Litvinov, Sergey25,50,51; Ayodo, George52; Comas, David53; Hammer, Michael F.54; Kivisild, Toomas25,55; Klitz, William6; Winkler, Cheryl A.56; Labuda, Damian57; Bamshad, Michael58; Jorde, Lynn B.59; Tishkoff, Sarah A.60; Watkins, W. Scott61; Metspalu, Mait25; Dryomov, Stanislav41,62; Sukernik, Rem41,63; Singh, Lalji64,67; Thangaraj, Kumarasamy64; Paeaebo, Svante9; Kelso, Janet9; Patterson, Nick2; Reich, David1,2,3 | |
2016-10-13 | |
发表期刊 | NATURE |
卷号 | 538期号:7624页码:201-+ |
文章类型 | Article |
摘要 | Here we report the Simons Genome Diversity Project data set: high quality genomes from 300 individuals from 142 diverse populations. These genomes include at least 5.8 million base pairs that are not present in the human reference genome. Our analysis reveals key features of the landscape of human genome variation, including that the rate of accumulation of mutations has accelerated by about 5% in non-Africans compared to Africans since divergence. We show that the ancestors of some pairs of present-day human populations were substantially separated by 100,000 years ago, well before the archaeologically attested onset of behavioural modernity. We also demonstrate that indigenous Australians, New Guineans and Andamanese do not derive substantial ancestry from an early dispersal of modern humans; instead, their modern human ancestry is consistent with coming from the same source as that of other non-Africans. |
WOS标题词 | Science & Technology |
DOI | 10.1038/nature18964 |
关键词[WOS] | MODERN HUMANS ; MUTATION-RATE ; HISTORY ; NEANDERTHAL ; ANCESTRY ; SEQUENCE ; AFRICA ; DISPERSAL ; ADMIXTURE ; INFERENCE |
收录类别 | SCI |
语种 | 英语 |
项目资助者 | Simons Foundation(SFARI 280376) ; US National Science Foundation(BCS-1032255) ; Human Frontier Science program(LT001095/2014) ; Wenner-Gren foundation ; Swedish Research Council (VR)(2014-453) ; NIJ(2014-DN-BX-K089) ; Career Award at the Scientific Interface from the Burroughs Wellcome Fund ; Natural Sciences and Engineering Research Council of Canada ; ERC(FP7- 261213) ; Russian Foundation for Basic Research(15-04-02543 ; Russian Scientific Fund(14-04-00827) ; Estonian Research Council ; European Regional Development Fund (European Union) through the Centre of Excellence in Genomics to Estonian Biocentre ; University of Tartu ; Spanish MINECO(CGL-44351-P) ; NIH(GM59290 ; Wellcome Trust(093051) ; NSF(0924726 ; CSIR Network Project grant(GENESIS: BSC0121) ; Packard Fellowship for Science and Engineering ; Max Planck Society ; 16-34-00599 ; 5DPIES022577 05 ; 1153911) ; 11-04-00725-a ; 1R01DK104339-01 ; 16-06-00303 ; 1R01GM113657-01 ; 16-04-00890) ; R01-GM094402 ; GM100233) |
WOS研究方向 | Science & Technology - Other Topics |
WOS类目 | Multidisciplinary Sciences |
WOS记录号 | WOS:000386671000037 |
引用统计 | |
文献类型 | 期刊论文 |
条目标识符 | http://119.78.100.205/handle/311034/7539 |
专题 | 中科院古脊椎所(2000年以后) |
作者单位 | 1.Harvard Med Sch, Dept Genet, Boston, MA 02115 USA 2.Broad Inst Harvard & MIT, Cambridge, MA 02142 USA 3.Harvard Med Sch, Howard Hughes Med Inst, Boston, MA 02115 USA 4.Whitehead Inst Biomed Res, Cambridge, MA 02142 USA 5.MIT, Harvard MIT Div Hlth Sci & Technol, Cambridge, MA USA 6.New York Genome Ctr, New York, NY 10013 USA 7.Univ Calif Berkeley, Dept Integrat Biol, Berkeley, CA 94720 USA 8.Chinese Acad Sci, Key Lab Vertebrate Evolut & Human Origins Chinese, IVPP, Beijing 100044, Peoples R China 9.Max Planck Inst Evolutionary Anthropol, Dept Evolutionary Genet, D-04103 Leipzig, Germany 10.Columbia Univ, Dept Comp Sci, New York, NY 10027 USA 11.Columbia Univ, Ctr Computat Biol & Bioinformat, New York, NY 10032 USA 12.MIT, Computat & Syst Biol Program, Cambridge, MA 02139 USA 13.Univ Peruana Cayetano Heredia, Fac Ciencias & Filosofia, Labs Invest & Desarrollo, Lima 15102, Peru 14.Univ Calif Berkeley, Computat Biol Grad Grp, Berkeley, CA 94720 USA 15.Univ Calif Berkeley, Div Comp Sci, Berkeley, CA 94720 USA 16.Univ Penn, Dept Stat, Philadelphia, PA 19104 USA 17.Univ Penn, Dept Math, Philadelphia, PA 19104 USA 18.Univ Penn, Dept Biol, Philadelphia, PA 19104 USA 19.UCL, Genet Inst, Gower St, London WC1E 6BT, England 20.Univ Bern, Inst Linguist, CH-3012 Bern, Switzerland 21.Leiden Univ, Med Ctr, Dept Human & Clin Genet, Postzone S5-P, NL-2333 ZA Leiden, Netherlands 22.Nanyang Technol Univ, Sch Biol Sci, Singapore 637551, Singapore 23.Nanyang Technol Univ, Lee Kong Chian Sch Med, Singapore 636921, Singapore 24.Univ Chicago, Dept Human Genet, Chicago, IL 60637 USA 25.Estonian Bioctr, Evolutionary Biol Grp, EE-51010 Tartu, Estonia 26.Univ Nacl La Plata, Inst Multidisciplinario Biol Celular IMBICE, Lab Genet Mol Poblac, CCT CONICET La Plata,CIC Buenos Aires, B1906APO, La Plata, Buenos Aires, Argentina 27.Univ Oxford, Dept Zool, Oxford OX1 3PS, England 28.Univ Bergen, Dept Clin Sci, N-5021 Bergen, Norway 29.CINVESTAV, Natl Lab Genom Biodivers LANGEBIO, Guanajuato 36821, Mexico 30.Siberian Branch Russian Acad Sci, Inst Cytol & Genet, Novosibirsk 630090, Russia 31.Novosibirsk State Univ, Novosibirsk 630090, Russia 32.Med Genet Res Ctr, Moscow 115478, Russia 33.Vavilov Inst Gen Genet, Moscow 119991, Russia 34.Moscow Inst Phys & Technol, Dolgopruclniy 141700, Russia 35.Med Univ Sofia, Dept Med Genet, Natl Human Genome Ctr, Sofia 1431, Bulgaria 36.Natl Acad Sci Armenia, Inst Mol Biol, Lab Ethnogen, Yerevan 0014, Armenia 37.Wellcome Trust Sanger Inst, Wellcome Genome Campus, Hinxton CB1O 1SA, Cambs, England 38.RIPAS Hosp, Bandar Seri Begawan, Brunei 39.UCL, Dept Genet Evolut & Environm, London WC1E 6BT, England 40.Case Western Reserve Univ, Dept Anthropol, Cleveland, OH 44106 USA 41.Russian Acad Sci, Siberian Branch, Inst Mol & Cellular Biol, Lab Human Mol Genet, Novosibirsk 630090, Russia 42.Univ Tartu, Dept Evolutionary Biol, EE-51010 Tartu, Estonia 43.Estonian Acad Sci, EE-10130 Tallinn, Estonia 44.SUNY Stony Brook, Dept Ecol & Evolut, Stony Brook, NY 11794 USA 45.NextBio, Santa Clara, CA 95050 USA 46.Gladstone Inst, San Francisco, CA 94158 USA 47.Univ Helsinki, Dept Forens Med, FIN-00014 Helsinki, Finland 48.Univ Washington, Div Med Genet, Dept Med, Seattle, WA 98195 USA 49.Natl Canc Ctr Singapore, Singapore 169610, Singapore 50.Russian Acad Sci, Inst Biochem & Genet, Ufa Res Ctr, Ufa 450054, Russia 51.Bashkir State Univ, Dept Genet & Fundamental Med, Ufa 450074, Russia 52.Jaramogi Oginga Odinga Univ Sci & Technol, Banda 40601, Kenya 53.Univ Pompeu Fabra, Dept Ciencies Expt St, Inst Biol Evolut CSIC UPF, Barcelona 08003, Spain 54.Univ Arizona, ARL Div Biotechnol, Tucson, AZ 85721 USA 55.Univ Cambridge, Div Biol Anthropol, Fitzwilliam St, Cambridge CB2 1QH, England 56.Leiclos Biomed Res Inc, NCI, Ctr Canc Res, Frederick Natl Lab,Basie Res Lab, Frederick, MD 21702 USA 57.Univ Montreal, CHU St Justine, Dept Pediat, Montreal, PQ H3T 1C5, Canada 58.Univ Washington, Dept Pediat, Seattle, WA 98119 USA 59.Univ Utah, Dept Human Genet, Sch Med, Salt Lake City, UT 34112 USA 60.Univ Penn, Dept Genet & Biol, Philadelphia, PA 19104 USA 61.Univ Utah, Eccles Inst Human Genet, Dept Human Genet, Salt Lake City, UT 84112 USA 62.Russian Acad Sci, Siberian Branch, Inst Archaeol & Ethnog, Dept Paleolith Archaeol, Novosibirsk 630090, Russia 63.Altai State Univ, Barnaul 656000, Russia 64.CSIR Ctr Cellular & Mol Biol, Hyderabad 500007, Andhra Pradesh, India 65.Univ Calif Los Angeles, Dept Comp Sci, Los Angeles, CA 90095 USA 66.Univ Calif Los Angeles, Dept Human Genet Sci, Los Angeles, CA 90095 USA 67.Genome Fdn, Hyderabad 500076, Andhra Pradesh, India |
推荐引用方式 GB/T 7714 | Mallick, Swapan,Li, Heng,Lipson, Mark,et al. The Simons Genome Diversity Project: 300 genomes from 142 diverse populations[J]. NATURE,2016,538(7624):201-+. |
APA | Mallick, Swapan.,Li, Heng.,Lipson, Mark.,Mathieson, Iain.,Gymrek, Melissa.,...&Reich, David.(2016).The Simons Genome Diversity Project: 300 genomes from 142 diverse populations.NATURE,538(7624),201-+. |
MLA | Mallick, Swapan,et al."The Simons Genome Diversity Project: 300 genomes from 142 diverse populations".NATURE 538.7624(2016):201-+. |
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